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Medals | | Club | I | II | III | Competitors |
|---|
| 1. | Audentese Spordiklubi | 7 | 8 | 7 | 34 |
| 2. | Olümpiko | 5 | 8 | 9 | 26 |
| 3. | Aitado | 3 | 1 | 1 | 10 |
| 4. | Spordiklubi Barra | 2 | 2 | 2 | 22 |
| 5. | Judoklubi Samurai | 2 | 1 | 3 | 19 |
| 6. | Kohtla-Järve Kalev | 2 | 1 | 1 | 5 |
| 7. | Ookami | 2 | 0 | 6 | 18 |
| 8. | Judoklubi Dokyo | 1 | 2 | 1 | 6 |
| 9. | Budolinn | 1 | 1 | 1 | 14 |
| 10. | Energia/Buffen-do | 1 | 0 | 1 | 6 |
| 10. | Kibuvits judo | 1 | 0 | 1 | 6 |
| 12. | SK Taifu / Viljandi SK | 1 | 0 | 0 | 7 |
| 12. | Tartu Valla Spordiklubi | 1 | 0 | 0 | 3 |
| 12. | Võru Judoklubi REI | 1 | 0 | 0 | 3 |
| 15. | Spordiklubi Altia | 0 | 1 | 2 | 6 |
| 16. | M-Dojo | 0 | 1 | 1 | 5 |
| 17. | Energia/Buffen-Do | 0 | 1 | 0 | 3 |
| 17. | Mikado | 0 | 1 | 0 | 1 |
| 19. | sk Dodze | 0 | 0 | 1 | 4 |
| 19. | Toni judokool EST MTÜ | 0 | 0 | 1 | 7 |
| 21. | Eneriga/Buffen-do | 0 | 0 | 0 | 1 |
| 21. | Sk Zen | 0 | 0 | 0 | 3 |
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